Basic Information | |
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Taxon OID | 3300031449 Open in IMG/M |
Scaffold ID | Ga0272429_1001069 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38290 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (30.77%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.7 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F000597 | Metagenome | 998 | Y |
F028368 | Metagenome | 191 | Y |
F028667 | Metagenome | 190 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272429_100106916 | F028667 | N/A | MTRDSESVESXTAHLLRSTVSKRVFLISFDTSARSQNVAISXNINISQQLRQXAINQSDEIIKMLIELRDQXNITLKLDEQXIDLQVDHIKRLDELKINQMTIDTQEKIIIELXKKVLSLKKKQRSVNQSRSQQSMKSRASIENHTQRESFFLFDNDHHKFFKFSNSFIFTDEDESTXDSXRIKINNKLQINVDHFDNENICIVYVISRLEDDAAEHIFAXYXHDALHSYISIDELFEHLEEIYNELNKNXKYRHKYNALRQADKSFNVFYFNFMKLFSYLEYNDCTLMNNLQNKINNRLQNALSVCSKNFTSLTRLRNFLQDVNNKQRVNYQLRSERCTVIIKVTVVSDKRATTFLSAVMTLIIDYVKSIIFSIFESDXAKLSIICYICKTLKHLFKNCSQNKINIFASHAFTLRLHEIVISKNKENEKMSFENSEAKN |
Ga0272429_100106918 | F000597 | N/A | MMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAANYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFNDHYAKKLIIHVIYLNLTVQDHTIDTAFMLITRLNQY |
Ga0272429_100106924 | F028368 | GAG | LCKLDEILSKENYFEKSFLIDTHLISQNRSFSLRSLIDSDSVVYTIIHSNLVDKVCEKLRIQSISLAKEKLIRGYDEKISKKIITHKILFNLIIESHKKLTVSMLIADIDHHEVILNKLXMNKNEILLNMRNDVIVFPNQLNTSISVFSILLNSKHSSWSQSTSSSSITQTKISIMLKQFVXKVSFSIRSIDAASFKTLLNRSKRDKIKVFALFMTNINREIAYNTQCNLNALNVSSINETTQNLKDIKAKLSSKYHEFLDVFDRAQLNKLFSLLRS |
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