NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1001069

Scaffold Ga0272429_1001069


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1001069 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38290
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (30.77%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F028368Metagenome191Y
F028667Metagenome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100106916F028667N/AMTRDSESVESXTAHLLRSTVSKRVFLISFDTSARSQNVAISXNINISQQLRQXAINQSDEIIKMLIELRDQXNITLKLDEQXIDLQVDHIKRLDELKINQMTIDTQEKIIIELXKKVLSLKKKQRSVNQSRSQQSMKSRASIENHTQRESFFLFDNDHHKFFKFSNSFIFTDEDESTXDSXRIKINNKLQINVDHFDNENICIVYVISRLEDDAAEHIFAXYXHDALHSYISIDELFEHLEEIYNELNKNXKYRHKYNALRQADKSFNVFYFNFMKLFSYLEYNDCTLMNNLQNKINNRLQNALSVCSKNFTSLTRLRNFLQDVNNKQRVNYQLRSERCTVIIKVTVVSDKRATTFLSAVMTLIIDYVKSIIFSIFESDXAKLSIICYICKTLKHLFKNCSQNKINIFASHAFTLRLHEIVISKNKENEKMSFENSEAKN
Ga0272429_100106918F000597N/AMMSMSDDSFASESLTTECVLSSNEISYSLKSLIDIEAANYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFNDHYAKKLIIHVIYLNLTVQDHTIDTAFMLITRLNQY
Ga0272429_100106924F028368GAGLCKLDEILSKENYFEKSFLIDTHLISQNRSFSLRSLIDSDSVVYTIIHSNLVDKVCEKLRIQSISLAKEKLIRGYDEKISKKIITHKILFNLIIESHKKLTVSMLIADIDHHEVILNKLXMNKNEILLNMRNDVIVFPNQLNTSISVFSILLNSKHSSWSQSTSSSSITQTKISIMLKQFVXKVSFSIRSIDAASFKTLLNRSKRDKIKVFALFMTNINREIAYNTQCNLNALNVSSINETTQNLKDIKAKLSSKYHEFLDVFDRAQLNKLFSLLRS

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