NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272429_1001828

Scaffold Ga0272429_1001828


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1001828 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26745
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038009Metagenome166Y
F040408Metagenome161Y
F048018Metagenome148Y
F050043Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_10018281F038009N/AMIKASSFQLDYVKLYKRSIKLICLKNNKSFKEERILTLDFXXVFFLNDLKNTIRSFLFQMKDKIERNLFLVNELSINXLLMSERRVILLLISRXETELLLASELRTELLLVSELKTELLLSSEXEIKLLLASKLNAELLLVSNL
Ga0272429_100182818F048018N/AVSXMIRRHSLSELSTYFLSXKYRXFLCSSHSTRKILLXCRALLQSVSIIXAANLSLISTYFHNIXVRMSAESSSRFKMSXSSXNLMFSMLNSSISRFIKTKICENAEIIENRYNXTESKVMICDXSFMTLMLKTSKMRFSTISRFKTXVFRIVXC
Ga0272429_10018282F050043N/AMIKIXSXLKKDEVEENEKLRKTERAINKSTIISHSCLCFIVSTTSFTXKINNVYMLFTHHNYCHLHQLHIIYTIYNVIYTHYNXRXIVIXSKVSLFLVFSQRFKDFYQELLEXINECTSSFIKVNKDINYXDQEXTYLEEKTIVMMNXHIEIRSKTRIRDXVEDQIXVSFETLXLCQDIV
Ga0272429_10018284F040408N/AMYDYESIFDIHIKNDAMKEEVSAAKKRVEMLQDVQNTLM
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.