NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1001922

Scaffold Ga0272429_1001922


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1001922 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25924
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (51.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F037508Metagenome167Y
F089602Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_10019222F037508N/AVIFRLEDDADQQIYAKRRVDALSFYQSLSELLKHLKEIYKDQNLIRKCRREYVALKQLNKFFSSFYSEFTRIFSFLNYDDVTLMNDIQNKINNRLQNALSVCLIEFSSLDKLKIFLQDVNNKQRVNYQLRDEQ
Ga0272429_100192231F089602N/ALNFIEISSEENNNLSEIIDITLQTVNQREIFHQRTFFLLIEEIVVVDKVIHVLLQSFAKI
Ga0272429_100192232F001951N/AMMTMMKLKFIDSSKDERERNENIVKITVTKMMIFESQELLVNAEMLLTLMNEMMTKMKRD
Ga0272429_100192235F021896N/AMMKNNLESKDFLKNVECNLTFLRSDKEYIFFDETSEQSSYSTIVIDESFIEVHEI
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