NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1003235

Scaffold Ga0272429_1003235


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1003235 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19395
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050043Metagenome145Y
F057011Metagenome136Y
F104134Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100323517F104134N/AMFIVMHTSCVSIAKIQHATHVERMISFVHVXVFFRFAQASELTAXREMSSLLSLQSDTIRFLXSVDTFAIFCRIYSIDFFCISFISLLFIILIMTSHFLRSDDRSSLNHCFFVTISSLVMFAYDVIFFERRVLLCICNCLLSSXIDIFSFYTSFVMNAFXFAXCFSSESSXKRXISFNAISFHEXSLLFSFFNVDIFISKSIMLATFSSSLHECFNFASLFSCDESMSLVIIFESALLQFVQFIIIQSSSRFTLSCL
Ga0272429_10032352F057011N/AVLXSNFENQCIRRXRVXLIYIELRVRFXFKKLVISFRVIKEIEIISLCSQIEVLSKENYFEKSFLINASLIFQSNSFSLRSLIDSDFVVYTLIHDKLVNKVCQKLEIQSILLAKEKLIREYDEKLARKTITHKILLNLTIESHKKLTVSMLIADIEHHEAILSKL
Ga0272429_10032356F050043N/AMINKTMIIIHSCLYSIISTTQFNXKINNVYASFTHDXCCHLRQLHITYNVIYTYYNRRXIVVXLKVFLFLVFLQRFEDFYRELLEQNHEYTSLFIKINQDINYXDQEXTHLKKKTIVMMNXHIKIRSETRIRDXVEDQIXVNSETLXLCQDII
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