NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1003696

Scaffold Ga0272429_1003696


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1003696 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18105
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (95.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023762Metagenome208Y
F041515Metagenome159Y
F094623Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_100369617F094623GAGGMSAHARAAGTIRWLERSPYLHEARITAADGVDLYAGYVAVTPGADVWRGYVGRGFVPLGLGPRTVMQAAVEQRVRDILAQGEDSYHAS
Ga0272429_10036964F023762GGAGMIAQAQDTYTPAIPAPGGTPRALTPQERGRLGGQATFARYGRAHYSRIGAVGFARAIEAGWGEYLLAKLAPSYRAKFGRDPVLGRNKAGDQARAVARKATPTLGVCAWLGCTAQATERHHIDGWQVSAETCALCAAHHTELEHLWRDALRRHRPFACTQEPPTKRAIAIGAGVGLDDAIP
Ga0272429_10036965F041515AGGAGMGMNQMIVLEVRQDDPQEAQDAPQTSPMNAAPTTLFEVIDRAVSAVLAQFDRWCDRDERDGEDEAHFEDYVRWRVAIIDDAAAQARTLMAGDSLADEGSRWLDAHARA
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