NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1010120

Scaffold Ga0272429_1010120


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1010120 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10457
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023762Metagenome208Y
F041515Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_10101207F041515AGGAGMGMNQMIVLQTRRDDAQEAQPSPEADPMSAAPTTLFEVIDRAVSAVLAQFDRWCDLDEREGEDEAHFEAYVRWRVAIIDDAAAQARTLMAGDGLAAEGSPWLAAHARA
Ga0272429_10101209F023762GGAGMVAQVQDTYTPAISAPGGTPRALTPQERGRLGGQATLARYGRDHYAAIGRVGFARAIEAGWGAYLLEKLAPSYRAKFGCDPVLGRNAAGDKARAQARRATPTLGLCAWLGCTAQATERHHIDGWQQSADTCGLCAAHHDELEHLWRDALRRHRPFARTQEPPTKRAIAISAGVGLDSAIP
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