NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1015869

Scaffold Ga0272429_1015869


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1015869 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7873
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F039410Metagenome163Y
F081945Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_10158691F039410N/AAIFLLMFVMNRAKTSILFFFEXFNSVLNEAASMLRIENDSFRTGRLSIIEVLVXVIEEGEVDCDQLECFELEEIEKIEIEVFNXFGKTMMSFRIFNNISFLFIQSLFNMTSXXSISAISIDTVNFLXLSIMRLSRILXVMIFLDIFSS
Ga0272429_10158692F008169AGAAGLKTRLQAKENTSSDFIYSERSRSQKIPDPSLFTDEKNPTXKNXYGKIQNKLEINADLFPNERVKLSYIHSRLFDDAAEIIQARRERDCVNLYKIIDDLLKELTQLFDDSNKKANFRREYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIADLKDKIHSRLRFVXVGQLVQSDSLKEIRFYLIHLNNDQRVIREIKNKIKRVNDLSKTIFHRATVVTQSVDHSKPDQLKSRDAILTSVKEADILVESCFICHKSDHSSKECLDRPTRINAVNNEYDRFDFDSDFDSKN
Ga0272429_10158693F081945N/AMSSRSLTEERFEEFRNRFSQISDADSSKPRTKPSSAASFIHEDDESFAETIIPPVFYEI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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