NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1020607

Scaffold Ga0272429_1020607


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1020607 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6588
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009446Metagenome317Y
F034417Metagenome174Y
F042663Metagenome157Y
F058564Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_10206072F009446AGGGGGVSDLGEDLARAYEARVAATDVELTPAAVRAVVHELGGGEGRSQVARGNKILAGQLGVAVRTVQRWQKEGGEARNISRSTPGLRISVQGIATEQQRAANARAFRERVMAQGLDVAPCRVMVLVYNEDRARPRNVGDMHIGGDALTEALDALEEGDVAGAAEAFGDAWLETYGMDVDASVTDVVGTFTLDV
Ga0272429_10206075F042663AGGAGMTTQATVSLPSIPPCPAVALDGDISVTTTFRPHDPIGATEVSASIDLPDDTALLNLLDTTIARLTAYRDAYRQAMTANDQPLMDEHADPAPVRAPLPLPVPWYAW
Ga0272429_10206077F058564AGGAMTTKPATPSPAPTWREIAVADIAAGVAPIQASAPDDGVPRVSGGQPLAALADALAPAVIWTCPYCGSDDLRVLYDERRACRVSTLTDTGDPADAAPWPSYAGDECVDIDPASFTFHCDACNSHDITPRKGGGINDLGHRHAA
Ga0272429_10206078F034417AGGAGGMTWAIVTPHSAWLAQATTAWAALEPQAPQGSQLRDLATIDLANFALLIEALAALTPGQVSQELQNLAGLRPVGAVLGIPDRGDTDGDAAAV
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