NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1029131

Scaffold Ga0272429_1029131


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1029131 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5093
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F017767Metagenome238Y
F032102Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_10291311F005901N/AVISRLEGDAAEHIFARCRHDASHSYILIDELFEHLKEIYDELNKNRKCRRKYNALKQADKSFNVFYFDFMKLFSYLEYDDCILMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNSKQRVNYQLRSERRTVIVKVTVVSDKRATFLSVTTSIIDYVKSTISSISESARSSIICYICKILDHLFKNCSQLNKIDTSASRAFIFRLHEIVISKNKENEKMSFENSEAKN
Ga0272429_10291312F017767N/AMSNDSFASESLTTEYVLSSNEISYSLKSLIDIKAADYSFIDEVIA
Ga0272429_10291316F032102N/AMKIADLKKNISESIYKQILEINKIDENCTLLREVIARDETQYEDIKLKNCRIQNEILYHDSQL
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