NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272429_1040860

Scaffold Ga0272429_1040860


Overview

Basic Information
Taxon OID3300031449 Open in IMG/M
Scaffold IDGa0272429_1040860 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3877
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.7Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F009580Metagenome315Y
F021026Metagenome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0272429_10408601F008735N/AMREIIIIVHVHALYQTLLSCIQSIFVFLIFKYVKKLLESKSNENSNKVCKKMNDERRLIIQDLCDDLSYCCKKLKIQFYINXRTENDEXKXNDDIMLLNLFLKLLHYAKNLDXIFNHTLSELFNSTLIIDQEIVRQLHLSKRIIKXDFNVXKCCRKCKSFIMSETELD
Ga0272429_10408603F009580GAGMICIQIFERNLAQKLNFSHEQQDFFIYINDITVVNIYDMQSEKLFIXAFFNDFAQMLQFAVVAKLSLVEDFLDFRNDQSLILNDDNDKA
Ga0272429_10408604F021026N/AMIVFCILRQAQFKVLVLILIDSEVFAYVFMNKFFAQQHHLFLHQLTHFHRLQEFDDQVALIDDIIHVVEITMILDEHIERLFFYVIELSQYLIIMSLSXLHHHVIDINFEHNILILSFFFCLNYCYSSFVKIYDLNQQEENFSFKVNKVAFFQSHSQFTHKKQLSSXITHKKQFNLQITHKK
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