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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031450 Open in IMG/M |
| Scaffold ID | Ga0272433_10000189 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 143019 |
| Total Scaffold Genes | 156 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (21.15%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004755 | Metagenome | 424 | Y |
| F009377 | Metagenome | 318 | Y |
| F021452 | Metagenome | 218 | Y |
| F064252 | Metagenome | 128 | Y |
| F087979 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272433_10000189129 | F004755 | N/A | LKELAELFNDSDKKVNFRRKYYNLIQASKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLXFIXINQLVQSDFLKEIYFYLIHLNNDQRVIREIKNKVNLIKHVNDLSKIIFYRVVVTQSVDHSKSDHLKLRDAILTSVKEADVLVEICFICHKSDHSFKECFNQSIRINAVNNEYNDFKFNFNSNFDSKN |
| Ga0272433_10000189142 | F064252 | N/A | VNQSXSRQFTKSQASIKNCTXRESFTLFNNDHHKFFKFLNSFIFTDEDESTXDSXRIKINDKFQTNVDHFDNENICIVYVISRLEDDVAEHIFAQHXHDALHSYILIYELFEHLKEIYDKLNKNRKCCHEYNTLRQADKSFNIFYFNFMKLFSYLEYNDCTLMNDLQNKINNRLQNALSVCSKNFTSLTHLRIFLQDVNSKQRVNYQLRSERCTVIIKVTVVPDKCATSLSVTTLIIDYVKLTIFSISESVRSSIICYICKILNHLFKNCFQLNKIDTSTSHAFTSCLHEIIISKNKENEKMSCENSEAKN |
| Ga0272433_1000018922 | F087979 | N/A | MKEKNENSTFIYMNQAKSRLNNSFINLKLQKFMHMTEIIETELLKLD |
| Ga0272433_1000018996 | F021452 | AGTAG | MLISCFINMLNDSFDFKLFIVNVILNSLEKIFQFFALINIEVTDMMFINDSLISELCKCFDIQSISLFKSKLIHSYDETLDXRFITHALYISVTIQEHKNKMMFLLITYLDQHNKIINNLXLKRNQILIDSANNXLISSSNI |
| Ga0272433_1000018997 | F009377 | AGAAG | MSNIEEKNMNALFFDYEMIKISINEELNAXIIDKRTDNIIIFIKYMIYQHDIEIETHNDMIQMLKDVNKINIKLKTIQTTLNTIRTRLQKKMRNKNVIIHHLETASSQQSTLISKDXFSKSIKLSDSSLFEDSKQNMNNXLFQMRNKLKMNKNHFSIEELKIAYVKSXVNETMIKHIAFRMRNAIMNSFLEAEEMLLIINKMYDNFNQRHTTQRQFLKLYQNKIFFHDF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |