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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031450 Open in IMG/M |
| Scaffold ID | Ga0272433_10000230 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 129213 |
| Total Scaffold Genes | 141 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 61 (43.26%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (30.77%) |
| Associated Families | 13 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F008668 | Metagenome | 329 | Y |
| F017941 | Metagenome | 237 | Y |
| F021452 | Metagenome | 218 | Y |
| F025887 | Metagenome | 199 | Y |
| F036994 | Metagenome | 168 | Y |
| F038010 | Metagenome | 166 | N |
| F044226 | Metagenome | 154 | Y |
| F058565 | Metagenome | 134 | Y |
| F061402 | Metagenome | 131 | Y |
| F098340 | Metagenome | 103 | Y |
| F102181 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272433_1000023022 | F008668 | N/A | MSFDSDMIDYETICERLEARKANDIVIQMKKLLNFDHQQLKKIKLIIKVQINKHK |
| Ga0272433_1000023023 | F036994 | GAG | MIIEAGSLVDLLIEEIDYRLVIEAGSLVAREREVD |
| Ga0272433_1000023031 | F021452 | N/A | MTESNILIFCFISMFNDSFDFKSFTVNVILSSLKKIFRSFTLINTEVTNIIFIDESLMSELCEHFDIQSISLLKSKSIQLYDEISDQKSITHTLYTLIMIQEHKNEMMFLLITCLNQYKLIIENL |
| Ga0272433_1000023033 | F061402 | N/A | MTEFVNNNAISSSIKQSTFFLNKNFHSHISFNSNLIEYEIIQARIEVDKAKNIFEHIK |
| Ga0272433_1000023051 | F025887 | N/A | MFDNSFNFKSFTVDVILSSLEKIFRFFALINTEVIDMTFIDESLMSELCERFDIQSISLLKSKLIQLYDEISD |
| Ga0272433_1000023052 | F098340 | N/A | MIKVAAYQTSVKNKKIKIFFLIINEINKALSSVEDFAKLNKMISVMSLNKLKKKLLIVYHDFLNVFDREKITQLSLH |
| Ga0272433_1000023059 | F001951 | N/A | MIITKLRFIDSSKDEKEKDEDTVETTVTKMMILELKELLVDTKMFLTLMNKTMIKMK |
| Ga0272433_1000023060 | F102181 | GAG | MIIVHIHALYQTLLSCIQLIFVSLIFKYVEKLLEFKSDDDSDRICKEMNDERRLIVQDLYDDLNYHCKKLRIQFYIN |
| Ga0272433_1000023062 | F044226 | GAG | MMKFSDNFNIVSITSMTFFYFNKEFHFQMSFNSNMTDYETTCEQLEVRKANDIVIQMKKLLNFNC |
| Ga0272433_1000023066 | F038010 | N/A | MNNDHFMLSDNLESNKINVNLSVLIDINVIDYAFIDDSFAQRHFLLCFSLSEICILQKFDDQSVVFNSITYYAFVKL |
| Ga0272433_1000023071 | F017941 | N/A | MKIADLKKNISESIYKQILKTNEIDKNCMLLREVIARDEIQYKDIKLKNC |
| Ga0272433_1000023077 | F000597 | N/A | MKDVLISSTMSMSDYFFASESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIMQIVYDQLQIESLTLIKVKSIQEFDNHYAKKLIIHIIYLNLTV |
| Ga0272433_1000023081 | F058565 | AGAAG | MNRTNRSSADSKMIASDVDSSQENRDAESKRSRDDEENVANIIDLLIKISTLEKEKSKDH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |