NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000343

Scaffold Ga0272433_10000343


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000343 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)103533
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (21.65%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F036994Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000034380F002432N/AMQNDXVKXIFMMKFNDNFNTFLIISMISFYFNKEFHSXISFNSDITDYKITHERIKARKVNDIVIXIKELLNFNHQQLKKMKLIIKVQINKYKXDVIYEVNNXVXLSFRNIKTMRSCKDLKDKQLSFYQIIVKADTLYHLHLSVSIKHLHSMFSMKLLQSYLNDCLSEQHAKSFRLIIIDDNNNKHXKINDILNFRCYRDXIQYKIKXKDLDRNDEXYYVDKEKFNDFKKVLNEFHALYSNKSR
Ga0272433_1000034391F036994AGCAGMXDRMIIEADSLVDLLIEEIDYRLVIEAGSLVAREREVDRFTDR
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