NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000369

Scaffold Ga0272433_10000369


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000369 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)99160
Total Scaffold Genes124 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (57.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021896Metagenome216Y
F055319Metagenome138Y
F071806Metagenome121Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000036984F071806N/AMKLQSQIIALDSVQLHLFSIISAFLQILTFMNLEIEEFNVKNIKSQLNQDTLNLDEDSADTFIQTL
Ga0272433_1000036985F021896N/AVTKNNLESEDFLKNVECNLTFLRSDKEYIFSDEMSERDSYSTIVINESFIEVREI
Ga0272433_1000036991F055319N/AMIEVRMKRLRLVNKMICIQISERDLAQKLNFSCRQQDFFIYIDDVIVVDIHDMQSKELLI
Ga0272433_1000036992F001951N/AMMTMTKLRFIDSSRNEKEKNEDTVKTTVTEMMIFKLKKLLVNAEKLLTLMNETMTKTKQD
Ga0272433_1000036993F087980N/AMIENSVKVFCIMRELQNQVQQHDVIISFSFIASSSSVYQELNSQFLVIIAQIIIQTLHNQSLFNVQVSANSVAVSIFIKFKKLLDIFEYEKNKNHLNV
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