Scaffold Ga0272433

Basic Information
Taxon OID	3300031450 Open in IMG/M
Scaffold ID	Ga0272433_10000403 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031450 Open in IMG/M

Scaffold ID

Ga0272433_10000403 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	93957
Total Scaffold Genes	90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (20.00%)
Novel Protein Genes	15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (26.67%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

93957

Total Scaffold Genes

90 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (20.00%)

Novel Protein Genes

15 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (26.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.87	Long. (^o)	160.75	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.87

Long. (^o)

160.75

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F005901	Metagenome	386	Y
F008735	Metagenome	328	Y
F010214	Metagenome	306	Y
F024448	Metagenome	205	Y
F039410	Metagenome	163	Y
F044227	Metagenome	154	Y
F048018	Metagenome	148	Y
F075493	Metagenome	118	Y
F076668	Metagenome	117	Y
F080690	Metagenome	114	Y
F083460	Metagenome	112	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000040315	F080690	N/A	MKSSHNFSIDNEHAVEQFTQSMIEISVEIFRVMQELQNQVQQHNVIILSSFIIFSSSIYIKLNSQFLMMIAQIIVQILNNQSSFIIHLSANFVTVIITSKFKKLLNIFKYERDKNXLNAXKQSLIQCMNMNDDHYFSHQVKIIYVESXLIINKKVYNLMNQYXVNNLCIIFIFADXXHKLCHYCENSFKTEDARLYFHETLKQDMNNFVNYYNLFYQKKKCSLMKDFSLIDCLKRNVNYFTQVITFFLLQF
Ga0272433_1000040322	F001951	N/A	MIMTKFRFIDSLKDEKERDEDTVKTTVTKIMIFEFKELLVDTKMFLTLMNKMIIKMK
Ga0272433_1000040334	F044227	N/A	MQLQIKSSNDEACIHALLKLIAFAIKNVTKYXLFKLLYNCYHHEESQSSSEDDDENKALEAI
Ga0272433_1000040344	F076668	N/A	MTCLLLTSXFLACASARKKLMNSTDNYVIKETISVFASTKKIMHMSNALLINMLMLCNRKLKDATNQKXLHCVRFENIRSQLKISFSKXSSNDLXERLCMTVLAQICYHTTIAFSALFXVLFKKLLKTLYAFLXKVSALLFHIITLVV
Ga0272433_1000040352	F075493	N/A	MRSVRAVQKYMLRRLMTSFAVASRTIRAXNISRVQISVQIYAFNSDVHCKSAFCFLKIITHLYRLIAQMQSLCXDCVDVCDAFSILFPSLILLIFVILHYCDAIACXNHCEEENVSSASRLYFRIFLNEDIQKYYFLDDEXARNDAINSRQMSAY
Ga0272433_1000040354	F010214	GAG	MRVSVLFDYDASSLLCSSLTIFYTTMSRFDSRFEDERHFLRTRDAHDCNVRRAVFSYSMIVIHXAEKYVMKERCTRXEDRVXLYXVILFFSXLDLCHVDVEXIVSIDVRSQSFDVXLXSMKENAFXSFSXALDFPRR
Ga0272433_1000040355	F010214	GAG	MLFIYDALSLFCSSLMIFYTTMFRFNLXFKDERCFLCTCDAHDCNICKAVFSYSMIVIHCTEKYVMKERFTXXEDRVXLYXVTLFFFXFDLCHVNVEXIVSINVQSQSFDIXLXLMKENVFXSFSXALDFSRR
Ga0272433_1000040357	F008735	N/A	VNLLIYDESXLNINDFNSMKEIMIIIHVHVLYQTLLSCIQLIFVFLIIKYVKKLLESKSNDDSDRIYKEVNDERRLIIQDLCNDLSYYHKRLRIQFYIDXRTENDEXRXNDNIMLLNLILKLLHYVKDNNNNNKFIHSCDID
Ga0272433_1000040361	F048018	N/A	MTLSXVSXMIQRRSLSELSMYFLSXKYRXFSCSSHLTRKILLXCCVSLQSTLIIXAVNLSLILICFHNVXVRISAESSSRFRMFXFSXDLMFSTLNSSISKFMKARIYKDAEITENKCNXTESKAMICDXSFMTLMSKTSRVRFLTILKFKTXVFRIV
Ga0272433_1000040366	F083460	GAG	MXLQIKSSDSQAYSDALLELNASSIKYAARCQLHELLNHCLNHEESQGNSENNDENKAAEAV
Ga0272433_1000040370	F002432	GAG	MIKFSENFNIFSIISMISFYFNNNFHSXMSFNSDTTDYETTCECLEARKADDIVIXMKELLIFDHQQLEKTKQIIKTQINKQKXDVIYEVNDXVXLFSRNIKTTKLCKDLKDKQLEFYQITVKVEIFYHLHLSISIKQLHSMFSLKLLHSYS
Ga0272433_1000040378	F024448	N/A	MSMSNDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCNQLQIKSLTLIKAKSIREFNDYYAKKLITHVIYLNLTVQDHTIDTASMLITRLNQHQMILEKTXINKINLVINMQINSLXFSNFNSSISKSIVLFSSHRIILK
Ga0272433_1000040379	F005901	N/A	LHSYISIYELLKHLKEIYNELNKNRKCCHEYNALRQADKSFNVFYFNFIKLFNYLEYNDCILMNNLQNKINNRLQNTLSVCLKNFTSLIRLRIFLQDVNSKQRVNYQLCSERCTIIIKVTVVSDKCVTSLSVTTLIINYVKLTIFSTFESVRSSIICYICKIFDHLFKNCSQLNKINTSASHAFISRLHEIIILKNKENEKMSFKNSEAKN
Ga0272433_1000040382	F039410	N/A	LYVISLLISIINKVKTSVXFFFEXFNSVLNEVVFMFQIENDFFXAVIEMSRLSIIKILVXVIEENKVDRSQLECFELSKIEKIEIEVFNXFKKTMSLFCIFNNISFLFIQNLLNMISXXLISAINIDTVDFLXILMMRLNRILXVMIFLNIFSS
Ga0272433_100004039	F002432	N/A	MXKSLCKRLKITASLFTVYHSEINDQSKQVNQDVERELRIYCNYMQNDXVKXISMIKFSDNFNIFLITSMTFFYFNKEFHLQMSFDSDTTDYETTHERLEARKADNIVIXMKELLNFDHQQLKKTKLIIEVQINKHKXNVIYKVDDXVXLSFRNVKTTRLCKDLKDKQLNLYQITVKVSIFYHLCLSISVKHLHSMFSLKLLQLYSEDFLSEQHSESLRSITIKDDEHXKIDDILNFRCYQDXIQYKVKXTNLDRNNEXYYVDKEKFDDSAKVLNEFHKLYSNKSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272433_10000403

Overview

Ecosystem & Geography

Associated Families

Sequences