Scaffold Ga0272433

Basic Information
Taxon OID	3300031450 Open in IMG/M
Scaffold ID	Ga0272433_10000513 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031450 Open in IMG/M

Scaffold ID

Ga0272433_10000513 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	83811
Total Scaffold Genes	95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (15.79%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

83811

Total Scaffold Genes

95 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (15.79%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.87	Long. (^o)	160.75	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.87

Long. (^o)

160.75

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F001951	Metagenome	612	Y
F018839	Metagenome	232	Y
F023763	Metagenome	208	Y
F028978	Metagenome	189	Y
F040408	Metagenome	161	Y
F041516	Metagenome	159	Y
F094622	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000051332	F094622	N/A	MFALKQKVYLNDSNSKDDVTAIMMKMNXKLDKRLRELALVIIHHDELKELVAKVKHFADVITVNQEYHEKIYKVYNDSQTSLKIMKVMISTKDQTRLQXV
Ga0272433_1000051339	F001253	GAG	VTFIKDMMKDVLISSTMSSSNDFFVSKSLTIKCVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDYLQIESLSLIKLKSIRKFDDHYAKKLIIHAIYSNLTVQDYMKCFVFMLIT
Ga0272433_1000051341	F018839	N/A	MMIAKVVTFNHLTSDLYAAVFIIAMFIELKDEAKLIKLNDFTILLNEDDFSLS
Ga0272433_1000051343	F028978	N/A	MKIADLKEKENDKSIYQLILEVNKINKNCILLHEVMLKDEAQYKDIKLKDCRVQNEILYQDDLLXVFFNEYL
Ga0272433_1000051348	F023763	N/A	MNFQNCLMLILISRIECILLFRKIFXVTRQSIQLIIDLVEIISDVIVEFKQKFTSISLMMIQLLNXHEILKIFVIQNHLNRIDKVFKLXLSFLKCINNDYKFFIINFVVTLDXVMLLXKVSDXMKNFVLIILKENVFEYIVXSIDFYHNLVIXITMMKNNLKSEDFLKNVECNLTFLKLNKEYIFSDETSKQSSYFTIVINESFIKVREI
Ga0272433_1000051355	F001951	N/A	MRIIIKLKFIDSLKNEKEKDKDTVETTVTKMIIFELKELLVNVKIFLTLMNEMMMKMK
Ga0272433_1000051371	F040408	N/A	MYDYESIFNIYIENNAIKEEVSAVKEHVEMLQDVQNTLM
Ga0272433_1000051384	F041516	N/A	MIQKVIHIHKAYNLSLKDHKIIHEKENLSNIEKMLHMSRKSILVKDFNLHYFTXEESFYS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272433_10000513

Overview

Ecosystem & Geography

Associated Families

Sequences