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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031450 Open in IMG/M |
| Scaffold ID | Ga0272433_10000521 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 82903 |
| Total Scaffold Genes | 99 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (24.24%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008115 | Metagenome | 338 | Y |
| F028368 | Metagenome | 191 | Y |
| F036035 | Metagenome | 170 | Y |
| F040408 | Metagenome | 161 | Y |
| F048017 | Metagenome | 148 | Y |
| F050043 | Metagenome | 145 | Y |
| F055318 | Metagenome | 138 | Y |
| F086375 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272433_1000052131 | F086375 | N/A | MFTLFINSKSITSXNHDENXFNEIKEHYKXQNNNHVALFKXLHKLKLFNIXKEVNKINKAAIKDNVKDEIKQERKNKDIYDNASQ |
| Ga0272433_1000052140 | F028368 | GAG | LCKLNEILSEENYFEKSFLIDVFLNSQNRSFSLCSLIDSDSVAHMLIHANLVNKVCKKLEIQSISLTKEKLIRDYDEKIFKKIITHKILFNLIIKSHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMRNNVIVFLNQLNTSISIFLISLNSKHSSXSRLTSLSFIIQTKILIMLKQSISTMTKKKIILNSKHKCSFVQNSTELIKEESDXSLCFIHDXYX |
| Ga0272433_1000052142 | F048017 | N/A | MKNKQLSRXQVNYLNVLSKFNFQIIFKSGKMNIKVNALIRMSLANVSESAQHLEDCFQTILILDRVDVLSVESKANLYQXVYKVNQTDKFCSKYKQAMNENKLKFHITKLKDCEIIDDILFRKDLLXISENMHTKLLQEVHDQSSIFHLDNK |
| Ga0272433_1000052143 | F008115 | N/A | MNFIIELSLSENYNIICTIICCFIKECHYVFCHXENNDISVEETVXIMLXNVYXLHDLFSSIVSNRDSQFISTMXKSLCKRLRITASLFTVYHFEIDDQLKRVNQDVEHELRIYCYYMQNDXVKXISMMKFSNNFNIFLITSMTLFYFNKEFHSXMSFNSNTTDYKTTHERLEAKKADDIVIXMKELLSFDHQQLKKTKLIIKVQINKHKQDVIYEVNDXVXLSFRNVKTTRLCKDLKDKQLSFYQITAKVSIFYHLRLSISMKHLHLMFSLKLLQSYSEDFLSEQHAELLRLIIIDDDNDEHXKINDILNFRRYQD |
| Ga0272433_1000052156 | F036035 | N/A | MKDRMKDDAMQRKHHELEKVSKNHERDNNDHLNNTFNKHTESISDCDIIKKSDERKRK |
| Ga0272433_1000052175 | F055318 | GAG | LNDIEALRDDEALCVDRVQSFRDRADFDNLNAHATSNLHADKKVK |
| Ga0272433_1000052186 | F050043 | N/A | MIEKNKVEENEKLREIERAINKSTIIIHSCLHFIISTTSFTXKINNVYVLFTCHHCCYLHQLHITYTIYNVIYTHYNXRXIIIQLKVSLFLIFSQRFEDFYRELLEXINECTSSFIRVNKDINSXDXEXTHLEEKTIIMMNXCIKIRSETRIRN |
| Ga0272433_1000052189 | F040408 | N/A | MYDYKLIFDIHIKNDAMKEEVSTAKERVEMLQNMQNTLMKQX |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |