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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031450 Open in IMG/M |
| Scaffold ID | Ga0272433_10000712 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 67344 |
| Total Scaffold Genes | 69 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (30.43%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004755 | Metagenome | 424 | Y |
| F006206 | Metagenome | 378 | Y |
| F008169 | Metagenome | 337 | Y |
| F028368 | Metagenome | 191 | Y |
| F032102 | Metagenome | 180 | Y |
| F087978 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272433_1000071210 | F028368 | N/A | MLIHANLVNKVCKKLEIQSISLIKEKLIRDYDEKIFKKIIIHKILLNLIIESHKKLTVLMLIADINHHKVILSKLXMNKNEILLNMQNNVIFFSNQLNTFISIFSIFLNSKHSSXSXSTSLSSIIQTKIFIMLKXSVSTTTKKELFSIQSINAASFKTLLNQSKKNQTEVFVLFMTDIDREITYNTQCNLNVLNVSSINEMTQNLKDIKVKLS |
| Ga0272433_1000071216 | F087978 | N/A | MFSLKLLQSYLKDFLSEQHSESLRLIIIEDDEHXRIDDILNFRRYQDRIQYKVKXMNLDRNDEXYYVNKEKFNDLKKVLNEFHKLYSNKSR |
| Ga0272433_1000071221 | F006206 | GAG | LCKLDEILLKENYFEKSFLIDTHLISQNRSFSLHFLIDDDSVIYTIVHSNLINKVCKKLKIQSISLTKEKLIRDYDEKIFKKIITHKILFNLIIESHKKLTASMLIADINHHEVILSKL |
| Ga0272433_1000071229 | F004755 | GAG | LSYIHSRLFDDIAEIIQAKHERDCVNLYRIIEDLLKKLAQLFNDLNKKVNFHRKYYNLIQEFKKFNEFYTQFQRLFFYLDYHEKQLIVDLKDKINFRLXFIXINQLVQSDFLKEIHFYLIYLNNDQRVIQEIKNKLKRVNNFSKTIFHKVTVITQSVDHSKSDQSKLHDAILTNVKKADVLVKICFICHKLDHSFKKCLNRSTRINAVNKEYDHFDFNSNFNSKN |
| Ga0272433_1000071233 | F032102 | N/A | MKIADLKKNISESIYKQILEINEIDENCTLLREAIARDETQYEDIKLKNCXIQNEILYYNSQL |
| Ga0272433_1000071242 | F028368 | GAG | MKYXIYYIXSTEEIKIISLCTLDEILSEENYFEKLFLIDIFLNSQNQSFSLHSLINSDSVAYMLIHANLVNKVCKKLEIQSILLTKEKLIRDYDEKIFKKIISHKILFNLIIKSHKKLTVSMLIADIDHHEVILSKLXMNKNKILLNMQNDIIVFSNQLNTSISIFSISLNSKHSSXSRSTSFSFIIQTKIFIMLKQSVSTTTKKESFSIRSINAALFKTLLNQSKKNQTEVFALFITDIDKEIAYNTQCNLNVLNDFAINETTQNLKDIKVKLSSEYHEFLDVFD |
| Ga0272433_100007129 | F008169 | N/A | MSKHSSIEEHFKEFQSCFSQISETDSLKLSSAESFINKDDKSFAETVISSISIENXKTXCMILDRETDQLNELSNQRDVEIKELKTKLQTKEITSSDFIYSERSRFQKISDSFXFTDEKNSTXKNXYDKIQNKLEINVDLFSNEXVKLSYVHFRLFNDAADVIQSRRERDCVNFYKIVNDLLKELAELFNDSDKKVNFRKKYYNLIQESKKFSEFYTQFQQLSFYLKYHEKQLIIDLKDKINSRLRFIXINQLVQSDSLKEIHFYLIHLNNDQRVIXKIKNKVNLIKHVNDLSKIIFHKAVVTQSVDHSKSDHLKLRDAILTNVKKADILVETCFICHKSDHSFKECSDRSIRINAVNNEYNRFKFDFNSNFNSKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |