NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000773

Scaffold Ga0272433_10000773


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000773 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63999
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (31.34%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F040408Metagenome161Y
F057011Metagenome136Y
F065268Metagenome127Y
F070712Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000077334F005901N/AMNDKLIVNVNQFDNETICIVYMLSRLEDNAAKHIYAXCHHDSSRSYYLIYELFKYLKEIYDEVDKNRKCRREYNALRQADKFFNVFYFNLIKLFSYFKYDDCILMNDSQNKINNRLQNILSVCFEDFTSLHRLKIFLQDVNSKQQVNYQLRSERCTVIIKVTVISDKCATTLLSAKTTLIINYVKSIIFSIFKSVRSSIICYIYKISSHLFKNCSQNKINISTS
Ga0272433_1000077342F040408N/AMYDYKLIFDIHIKNDAMKEEVSTAKEHVEMLQDVXNMLMKQX
Ga0272433_1000077356F070712GAGMNNIKEKKFMIKIRKQVIFAEKXDSLNSYKKIKVILSVDSSKSRDATLTNVKETDIQTESCFIYHKSDHFFRECSDQTSRINALKDDKFDXFTLNSESDSDSKN
Ga0272433_1000077357F057011N/ALCSQIEVLLKENYFEKSFLINASFISQSNSFSLRSLINSDFVVYMLIHDKLVNKVCQKLEIQFISLVKEKLIREYDEKLARKIITHKILFNLMIESHKKLTMLMLIADIKHHEAILSKFXMNKNEILLNIRHDTIVFFNQLNISISIFSISSNTKHSSXSXSTFISSAAHSKIFKMLKHSVLFIQKESFLI
Ga0272433_100007739F065268N/AMTRSTELESESVSIAHYELQNARRESLLSQNXTASEEEDMNASLNTKEENMNALLFNHEMIKISISTELNAXISIHEADDLIIFIKYMC
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