NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000817

Scaffold Ga0272433_10000817


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000817 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61580
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (58.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F059497Metagenome133Y
F061401Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000081713F059497GAGMFIENINRKIIYNTQCKLNVINVFFTDETTQNLENIKVKLSLKYQNFLNVFDQVQADKLLSHQSYDHKIELTSDVTSSHCQAY
Ga0272433_1000081714F006206GAGLCSQIKVLSKENYFEKSFLINASFISQSNSFSLRSLIDSDFVIYTLIHDKLINKVCQKLEIQFILLVKEKLIRDYNEKLVRKTITHKILLNLTIKSHKKLTMLMLIADIEHHEAILSKL
Ga0272433_100008175F061401N/ALNNDQRVIQEIKNKIKHVNDFSKTIFHKVTVITQSVDHLKSDYLKSRDVILINIKEADILVESCFIYHKSEHSFKECFD
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