NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000848

Scaffold Ga0272433_10000848


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000848 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60077
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (57.32%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F006206Metagenome378Y
F036036Metagenome170Y
F044226Metagenome154Y
F061401Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000084856F036036N/AMLVSLIHHLLSCFNQSFASENQCLIYMIEYIFDSSNLQTFASAFILDDVRIEAHTKVKALVHEEENQ
Ga0272433_1000084861F000597N/AMKDVFISSMISMSDDSFASESLTIECILSSNEISYSLKSLIDIEAADYLFIDEVIAQIVCDQLQIKSLTLIKAKLIQEFDDHYAKKLITHVIYLNLTVQSHTIEIASMLITQLNQH
Ga0272433_1000084877F061401N/ALNNDQRVIRKIKNKVNLIKHVDDLSKIIFHKAVVTQSVNHSKPDHLKSCDAILTSVKEADVLVEICFICHKSDHSFRECSDRPTRINAVNNEYDHFEFDFNSNFNSKN
Ga0272433_1000084878F006206N/ALCKLDKILLEENYFEKLFLIDVFLNFQNQSFSLHSLIDSDSVTHTFIHANLVNKVCEKLEIQSISLTKEKLIRDYDEKISKKIIIHKILFNLIIESHKKLTVSMLIADINHHKVIMSKL
Ga0272433_1000084881F044226GAGMMKFSDNFNIFSIISMISFYFNKEFHSRMSFDSDTTDYETTRERLEARKADDIVI
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