NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000894

Scaffold Ga0272433_10000894


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000894 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58295
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (33.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040408Metagenome161Y
F048019Metagenome148Y
F058565Metagenome134Y
F102179Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100008941F058565AGAAGMMNCTNRSSADSKTIASDVDSSQENRDAELKHSCDDEENIANIIDLLIKISTLEKEKSKDHS
Ga0272433_1000089416F040408N/AMYDYKSIFDIHIKNNAMKEEVSAAKECIEMLQDVQNTLMQ
Ga0272433_1000089419F102179N/AVINEVEKMSVHSVNENMSTCSAMHVRSMLLRIMILTVQEMYLDKVHFSRNRISQFESTTSRSTDVETLIHKDCNVAEKQLNSVVETVDCKQLISHAIVKVLIIHEMIYDFSSKFIVELIKILQQEN
Ga0272433_1000089428F048019GAGVYAFVMINVVKELIIEHQVKAMNNVISYITNAFKMQTLLIELKEYEDVFLTESVDKLLLHEDHNHAIEITAKSSYESLYNLLNTELATLRQYLNDVLAKE
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