NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10000942

Scaffold Ga0272433_10000942


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10000942 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56070
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (47.62%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F041516Metagenome159Y
F055319Metagenome138Y
F087980Metagenome109Y
F102180Metagenome101Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000094211F055319AGCAGMIEVRVRRLRLVDKMICIQISERNLAQKLNFSYRQRDFFIYTDDVTVINVHDMQNEELLI
Ga0272433_1000094214F001951N/AMIITKFKFINSSRNEKERDKDTVETTVTEMMIFELKELLVDAKIFLTLMNKTIMKMK
Ga0272433_1000094215F102181GAGMIIIHIHALYQTLLSCIQLIFVLLILKYVKKLLEFRSDDDSNKVCRRMNDEKRLFIQDLCDDLNYHHKRLRIQFYIN
Ga0272433_1000094216F087980N/AMKLSYNLLIDDEHAVKQFTQSMIENSVKIFYAMQELQNQVQQHDVITSFLFIIFSSSIYIKLNFQSLVMITQIIAQILNNQSFFIVYFSANSVTVIITSRFKKLLDIFKYEKNKD
Ga0272433_1000094217F102180GAGLTLIITHHDELKELVARAKHFADVATANQECHEKIYKVYNDSQTFLKTMKVMISTKDQTRLQ
Ga0272433_1000094218F041516N/AMTQKVIHIHEVYNLSLKDHEIIHEKENLSNIKKILHMSKESILVKDFNLHHFT
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