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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031450 Open in IMG/M |
| Scaffold ID | Ga0272433_10000970 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 54812 |
| Total Scaffold Genes | 63 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (14.29%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F009377 | Metagenome | 318 | Y |
| F028368 | Metagenome | 191 | Y |
| F051591 | Metagenome | 143 | Y |
| F064254 | Metagenome | 128 | Y |
| F104136 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272433_1000097013 | F009377 | AGAAG | MYCSRIEIXSFTXISISNFSTHIMTRSKKSESVSIAHYELQNAKRESLLSHNQVASKEEDMNVMLNIKEKNMNILLFDHEMIKISINKELNAXIIDKKTDDIIIFIKYMTHQHNIEIKTHNDMIQMLKNVNKINIKLKITQMTLNTIKMRLQKEMRNKNVIIHHLKTALSXQSTLISKDQFLKLIKLFNSSLFEDLKQNVNNXLFQMRNKLKINKNHFSIEELKIAYMKSQVNETMIKHIALQMRNAITNSFLEAEEMLLIINKMYNDLN |
| Ga0272433_1000097014 | F064254 | N/A | MLIESIIXIIIIITLMISKSFLKFVMFSFSYIAFHYTFHLKHVNKMCLINIXSLSHLHIIIATLSTHLSCRNXLKSIFLICSCINNALXNFAXFLCSHRCXCVIFDVKCXKXAALNLSFQTTFYVYLIYFRMSVNLVITSVH |
| Ga0272433_1000097020 | F002432 | N/A | MXKSLCKRLRIIASLFTAYHSEIDDQTEQVNQNVERELRIYCNYMQNDXAKXISMIEFSDNVNTFLIISMIFFYFNKEFHSXMSFNSDTTDYEITCERIEARKSDDIVIXMKELLNFDHQQLKKTKLIIEAQINKHKXDVIYEINDQIXLSFRNVKITRSCKNLKDKQLDFYSIIVKVKTFYHFRLFTSMKHIHSMFSSKILQLYSNDSLSDQHIKSLKSITIKDEEHXKINNILNFRHYQDXMQYKVKXKDLDKDDDXYYIDKEKFNDFKKVLNEFHMLHSNKSR |
| Ga0272433_1000097022 | F028368 | N/A | MLKLIYQSQCSXXELXLFXTXYXIRVXVKKLVISSTVTEVKIISLCNLDEILSKENYFNKSFLVNALLILQNESFSLRSLIDSDSAVYMIIYINLVDKVCKELRIQPILLTKEKLIKEYDEKIFKKTITHKILSNLIIESHKKLTVSMLIVDIDHHEVILEKSXMNKNEILLNMQIDVIVFSNQLNTFILIFSISFNLKHLSXLXSTSFTFISQLKISRMLKXFISTMIQKESFSIQSINVASFKTLLNRLKKNQTEVFALFMKNIDRKIAYNTQCNLNALNVSFVKKMTQNLKAIKVKLSSEYHDSLDVFDQA |
| Ga0272433_1000097026 | F104136 | GAG | MICSIRLVQIFNKQCSMNESLIXMNSSTSACKLTFNXRNXMLNQLLKHXXLKSLALSLASXXCSXSRSQFYSLHERNSEYQTLTLLKKSCLKKNSALNARSQNIKHVTVSSQLRYMKLQRFXKMICFRQSSDXEQHAHILLH |
| Ga0272433_1000097044 | F051591 | N/A | MLDAIALYLMYQSSHVISLRIVTTDLDLLSCASIKDKTDSDLIRNAVLLXNNVVLCAIFKHKRVXFRFLCQYAVFCAVLKSIDNLFSLCEFALQFINQITVXIDDSFFCVDELSFRRRFXPAXARKILIFDFXLATQSSVKLLSRMRACFDHIIMLYNLTIDLIYHMLR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |