NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001143

Scaffold Ga0272433_10001143


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001143 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49463
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (26.23%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033265Metagenome177Y
F036035Metagenome170Y
F037509Metagenome167Y
F087978Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000114331F033265N/AMFSIIEKMMTFQLKKXFESCYETSIDCMIYSVLLFRTETLNLYQLCERVFASDXESQLVYSQSIILRLMINXNESIKMLNANLEFTTITCRTTESNKYLXXNSATISISSQSLQXSSSTLIKNFTLEXVSIQIQLTMKQLMNNLKLEKQMILSFKXKSYXASIINNXKRRSXSLKFRSINIDETLSMK
Ga0272433_1000114332F087978N/AMFSLKLLRLYSKDFLSEQHAESLRLIIINDDNDEYXKIDDILNFRCYQDXIQYKIKXKDLDKDDEXYYVDKDEFNNFEKVLNKFHVLYSRKLR
Ga0272433_1000114351F036035N/AMKDRMKNDAMQREHHELEKASRNHERDDSDHLNDTLDKHTESISDCDVIKESDERKRK
Ga0272433_100011439F037509N/AMILISLLIQINLTDNETSIKKFVYLMIDDIKRQNNIKKLIKSTKIYNHVIAREFIAQSVASVQINX
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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