NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001152

Scaffold Ga0272433_10001152


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001152 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49172
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (20.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028978Metagenome189Y
F032102Metagenome180Y
F037509Metagenome167Y
F066295Metagenome126Y
F069514Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000115229F037509N/AMILIFILIQIHSTDNEMSIKKFVYLMIDNIERQNNIKRSIKSMRTYNHVIARESIAQSVASV
Ga0272433_1000115230F032102N/AMKIVDLKKNINESIYKQILETNEIDENCTLLRKAIARDETSYEDIKLKNCRIQNKILYHDSQL
Ga0272433_1000115245F028978N/AMKIADLEEKENDESIYQLILEANRINENCILLHEVVLKDEAQYKDTKLRNCXVQNEILYQNDLLXVLFDEHLQMKLI
Ga0272433_1000115246F069514N/AMQNDXAKLLLMIEFVNNNALFSVIFLISFFLNKDFHSHISFELNVIEYESFRKCLQTTKVENISEHMNKTLKFARESLVKR
Ga0272433_1000115250F066295AGAAGLKTRLQAKENTSSDFIYSERSKYQKISDSSLFTNEKNSTXKNXYEKIQNKLKINVNLFSNERVKLSYIHSRLFNNAAEIIQVRCEXDCVNLYKIIDDLLKELAQLFNDSNKKVNFHRKYYNLIQEFKKFNEFYTQFQRLSFYLDYHKKQLIVNLKDKIRSRLXFIXVNQLV
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