NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001199

Scaffold Ga0272433_10001199


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001199 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47977
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (32.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036994Metagenome168Y
F039410Metagenome163Y
F066295Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000119912F066295AGAAGLKTRLQAKENTSSDFIYSERSRSQKISDSSLFTDEKNSTXENXYEKIQNKLEINVDLFSNEXVKLSYIYSRLFNDAAEITQARREQDYINLYKIVNDLLKELAQLFNDSNKKVNFRRKYYNLIQEFKKFNEFYTQFQRXFFYLDYHEKQLIVDLKDKINSCL
Ga0272433_1000119913F039410N/AMFKLHXVLYAISLLMFIINKAKTSILFFFEXFNSVLNEAMFMLXIKNDSFXAMIEMNYLSIVEILVXVIEESEDDRDQLECFELREIEKTEIEVFNXFKKTMTLFHIFSNISFLLIQSLLNMTSXXLISAINIDTVNFLXLLMMRLDRILXVMIFLNIFPL
Ga0272433_100011995F036994AGCAGMXDRVIIEAGSLVDLLIKEIDYRLVIKADSLVAREREVDRFTDR
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