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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031450 Open in IMG/M |
| Scaffold ID | Ga0272433_10001236 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 46847 |
| Total Scaffold Genes | 48 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (25.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010214 | Metagenome | 306 | Y |
| F021216 | Metagenome | 219 | Y |
| F048017 | Metagenome | 148 | Y |
| F070712 | Metagenome | 122 | Y |
| F104134 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272433_1000123618 | F070712 | N/A | LIQSESFNEICSYLIHLNNEHXVINDIKEKKFLIKIRKQVIFAEKXDFLNLYRKIKVIISVNSSKSCNATLTNVKETDLQTESCFIYHKSNHFFKECFDQTLKVNVLENDEFN |
| Ga0272433_1000123639 | F010214 | GAG | MRVSVLFDYDASSLFCSSLTIFYTTMFXFDLXFEDERRFLCIRDARDCNVRRAVFSYSMIVIHXAEKYVMKERRTRXKDRVXLYXVTLFFSXFDLCHVDVEXIVSIDVRSQSFDVXLXSMKENAFXSFSXALDFPRE |
| Ga0272433_1000123642 | F021216 | N/A | MKIRMKSNAMRRKHHELEKALRNHERSNNDHLNDTLNEHTESISSYNIIKKSDERKRK |
| Ga0272433_1000123644 | F048017 | N/A | LKFNFQIIFRSGKMNTKVDALMRMFLANISESAQRLEDHFQTILILDRVNVLFIESKANLYQXVXMINQTDEFCSEYRQAINENKLKFHITKLKNYEIIDDVLFRKDLLXISENMHTKLLQEVHDQSSISHFDNKXIIDLVQHFYY |
| Ga0272433_1000123645 | F010214 | N/A | VSVLFIYDASSLLCSSLTIFYTTMSRFDSXFEDERRFLCTRDARDCNVRRAAFSCSMIVIHCAEKYVMKERCTXXKDRVXLYXVTLFFSXFDLCHVDVEXIVSIDVRSQSFDVXLXSMKENAFXSFSXALDFSRR |
| Ga0272433_100012365 | F104134 | AGG | MSSLLSLRSDTIRFLLPVDTSAILCRICLINFFCISSIFLLFIILIMTSRLLRSDDESTLRRCFLVAISSLVTFAHDVIFVERRVFFCVCNCLLSSXTDVFSFCTFFAMNAFXFVXCFSSESSXRHXISFNAISFHEXSLLFPFSNVDIFISRSIMLAMFSSSSRECFDSASLFPCDESTSLAIIFESALLRFVQFIVVQSSSRFTLSCL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |