NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001358

Scaffold Ga0272433_10001358


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001358 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43849
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (27.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002432Metagenome559Y
F026450Metagenome197Y
F029296Metagenome188Y
F078020Metagenome116Y
F104134Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000135816F104134N/AMSIVVCTSCVSTAKIQRATCVELTISFAHVXVFFRFAXASELTAXRKMSLLLSLQSDMIKSLXFVNTSAILCRICSINFFCISFISLLFIILIMTSHFLQSDDESSLRRCFLVVISSLITFAYDMIFVERRMLLCVCNCLLSSXIDVFSFYTSFAMNMFXFTXCFSSELSXRHQISFNAISFHEXSLLFSFSNVDIFISRLIMLVTFSSSLHKHFNFAFLFSCDESTLLAIIFESALLRFMQFIVIQSSSKFTLSCL
Ga0272433_1000135822F002432N/AMKFSDNSNIFSITSMILFYFNKEFHSXISFDSDITDYETTCERLEARKANDIVIQMKELLNFDHQQLKRTKLIIEIQINKHRXNITYEIDDXVXLSFKNVKTTRLCKDLKDKQLDFYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLQSYSENFLSEQHSKSLRSIIIKDNEH
Ga0272433_1000135825F029296AGTAGMNKHRXNIIYEVDDQVXLVFENIKITKSCKDLKDKQLDLYSITVKVEIFYRLQLSRSMKHIHSVFSSKYLRSSSNNSLLKQHSELSRLMIIEENEEHXEVDDILNFRRYRERLQYKIKXIEINHDDEXYYVDKGKFDDSKKVLNKFHKLYSNKSH
Ga0272433_1000135828F078020N/AMQFFFDRLINAXKDAALTLNIEKFFFKAVEADCXSILRAELIEEFDDHDHFECEALTDIEKTKMKAFNXFEKTMTSFCIFSSISFLFIQNFSNMTSXXFISAINIETVNFLXLSTVRLSRILXVMIFFVSFPLYSLINFSLASCMSXISSFXHI
Ga0272433_1000135830F026450N/AMSCFFKERFEASFFIVEDNDSFAEIITFSMTMKALKKRCEELKARLQAREIISSSSIYSERSRSQKILDSSLFTDEKNSIXKNXYEKVQNKLEINVDLFSSEXVKLSYVHFRLFDNAAEITQSRRERDCFNSYKIVNELLKELAQLFNDSDKEVDFCRNYYNLIQEQKKFSKFYTQFQRLFFYLNYQEKQLIVDLKDKINFQLQFTXITQLIQLSTLKEIRFYLIRLNNDQQAIQEIKNKEAMIKA
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