NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001464

Scaffold Ga0272433_10001464


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001464 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41858
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (10.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F021026Metagenome220Y
F023763Metagenome208Y
F038484Metagenome165Y
F061399Metagenome131Y
F083460Metagenome112Y
F086376Metagenome110Y
F091080Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000146410F023763GAGMSFQNCLMLILISRIECILLFKKIFXATCQSIQLIINLVEIISDAIVEFRQKLTSTSLMMTQLLNXHEILKIFMIHDHLNRINKVFKLXSSFLESANNDHEFFIVDLVVTLNXVMLLXKVSDXIKNLILIILRKNVFEHIVXSIDFYHNFVIXIIMMKNNLESEDFFKSVECNLTFLRSDKEYIFSDEMSERDSYSTIVIDESFIKVREI
Ga0272433_1000146412F021026N/AMNKFFTQQHHLFLHQLIHSRRLQEFDDQVALINDITYVVEITMILNEHIERLFFYVIELNQYFIIISLSXLHHHIIDVNFEHNILILSFFFCLNHCCSFLVKIYDLNQQEENFSFKVNKVTFSQSRFQFAHKK
Ga0272433_1000146413F008735N/AMREIMIIIHVHTLYQTLLSCIQSIFVLLILKYVKKLLKFRSDDDSDRICKRVNDKKRLIVQDLCNDLSYHCKKLRNQFYINXRTKNDEXEXDDNIMLLNLILKLTHCMKNLNXIFNHTLSELFDSMLIIDQEIVKXLHLSERVTRXDFNV
Ga0272433_100014642F083460GAGMQLQMKSSDSQAYSDALLELNTSLIKYAARHQLHKLLNHHFNHEESQDNSENDDENEAAEAV
Ga0272433_1000146420F091080N/AMIILCXSKQVINKNIISFLYFCIMIDVYKVYLIDFQSEVSSYDXIDFDFDSNIDXISKCSHSSDIKDSLMKVMLMTSVFIRARNLNIFSRLFKMTSTVNNLKLNQSSNMLMKQNINILLSIITLMKTDHFSNLQ
Ga0272433_1000146438F086376N/AMTRSTESESVSITHYDFQNVKRESLLSQNQAASEEKKGMNAMSNTEEENINVLLFVYKMIKISINKELNAXITINKTDDIIIFIKYMLHQHDIEIKIHNNMIQMLKNINEINITLKIMQTCLQKKNRDKNVIIHYLKAASSXQSTSISED
Ga0272433_1000146439F038484N/AMRSILMCIARMLSAFXRSSRIFIILLLRCDLCAEIALMSATRSLYFSHRXFHXSLXYCVIAMLSLVEIIVKKKMYHLRLDCIFASSXMKTFRSTIFLMTSEREITRLTLVKRARISSHACLTSCVXSLTRLCSVILFCSMFRXTCSELMYVSVFRVSMFTLLNASATXRRVXFXSISSLHSLFDSSSFLSRXCQTDASNAISDLTTAEYTCLAFVKIASHVKTSRRLSVSILVTXFISICQRCASYRSFVFSCIFKTRRSDFNLITELSIYMLVVMSNFFDFLVKCVSLYFSDANVAS
Ga0272433_100014649F061399N/AMNYVNSLSLNIFINITYKYVLVFINHFIKIRHLVLITFMKVEEVINCFYAHVXKHHDLLEFFVSDQDTQFIFNVXKHMCKMLKINAKLSMMYHFKIDDQIKRINAVMKHYLQIFVNYMQNDXVKXLSEVEFIINNASSLITLASLFLINLSQNSCLDFKSSESLLENLTFQAXNELINVEEFIKKMKKLTEHLRDEMLIAQIIYEFNVNFFHCSCSKYFIEDEVXLNVHNFSIAHLTIKLNNHNVDLFKIKCVFKNNSLIIKLNLSVFMKIHSIFYVILLNHITSDFLLSQHQKSQELVIIKNDERFXYVNSILNFKRDKCYNSSLLKYYIN
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