NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001479

Scaffold Ga0272433_10001479


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001479 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41656
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (11.63%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017767Metagenome238Y
F075494Metagenome118Y
F104135Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000147915F017767N/AVLISSTTSMSDDSFASESLTTECVLSSNEINYSLKSLIDIKAADYSFINEVTAQIVCD
Ga0272433_1000147922F104135N/ALNILKHQLSLYSDEHKXAHLFIKLRFELHVIITNVQLISITXNALINLVAXLKTNLQKEYILSSKLFQDENLYDQDKINKKTYSKRKKFYRLIKLNSSLKSSSHASSHYSKDLFNITCXTCNXKDHYTINCKDEKIKNRSKESDVNQVFIDLMLYMSYLKILKKDKLLMNASNH
Ga0272433_100014798F075494N/AMINDVKKTFVHSVSKQRYSVKHVENRSQDEIYCTXMINEVKKMFAHSVSENMNTCSAMHVKSMLLKVMILAVQETHLDKVHFSRDRISQFKSTTSKSTDVETLIHKNHNIIEKQLNFVAETVDCKQLISRTIVKVLTIHETIYNFSSKFIVKLIKILQ
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