Scaffold Ga0272433

Basic Information
Taxon OID	3300031450 Open in IMG/M
Scaffold ID	Ga0272433_10001560 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031450 Open in IMG/M

Scaffold ID

Ga0272433_10001560 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40007
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (27.08%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

40007

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (27.08%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-77.87	Long. (^o)	160.75	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-77.87

Long. (^o)

160.75

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F006206	Metagenome	378	Y
F008735	Metagenome	328	Y
F009580	Metagenome	315	Y
F028978	Metagenome	189	Y
F033266	Metagenome	177	Y
F036504	Metagenome	169	Y
F037509	Metagenome	167	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000156011	F002432	N/A	MKFSDNFNIFSITSMTFFYFNKEFHLXMSFDSDTTDYKTTCEQLKARKANDIVIQMKKLLNLSHQQLKKMKLIIEVQINKHKRDVIYEVNDXVXLFFKNVKIMRSCKDLKDKQLELYQITIKAKVFYHLHLSVSMKHLHSMFSSKLLQLYSEDFLSEQHAEFFRLIIINDDDDEHXEIDDILNFRCYQD
Ga0272433_1000156020	F009580	AGCAG	MIEVRVRRLRLVDKMICIQISEHDLAQKLDFFRRQRDFFIYTDDITVVDVHNMQSEKLFIXAFFSNFAXMLQLAVVTQLSLVADFLDLRNDQSLILNDDNDET
Ga0272433_1000156021	F001951	N/A	MMKLRFIDSSKDEKERDEDTVKTTVTEMMIFEFKKLLVDAEILLTLMNETMTKMKXD
Ga0272433_1000156023	F008735	N/A	MSLLIYDESXLDINNLSSIKEITIIVHVHALYQTLLSCIQSIFVSFILRYIEKLLEFKSDNDSDRVCKKINDERRLIVQDLCDDLSYYCKKLRIQLYINXRTENDEQEQDDNIMLSNLILKLLHYAKDLDXIFNHTLSELFNSTLIVDQEIVRQLHLSERITKXDFNVXKCCRKCRSFIMLKTRLN
Ga0272433_1000156024	F033266	N/A	MFSSSFTEEHFEEFQNRFFQTSDVDSSKSSSAASFIHEDDKSFAEMIILFMFYEIXKTRSLALNEETDRLYKLNKQQEDEIKELKTKFQAKQNTSSDFIYFEHSCHDVKSSIXFRT
Ga0272433_1000156026	F002432	N/A	MQNDXAKXLSMIEFSENFNIFLIISMTSFYFNKSFHSRMSFNSDTIDYETTHERLKAKKANNIIIRIKELLIFDHQQLKKTKQIIEAQINKHKXDIIYEVNDXVXLFSRNIKTTKSCKNLKDKQLKLYQITVKVEIFYYLCLLISMKQLHSMFSSKLLRSYFNDFLSEQHSKSSRSLTIKDDEHXEIDDILNSRXYXDXIQYKIKXTKLDQDNEXYYVNKEEFDDLKEVLVEFHKLYSDKSH
Ga0272433_100015603	F002432	N/A	MQNDXAKXLSMIEYSKNFNIFLIISMTLFYFNKSFHSXISFNSDTTDYKIIHERLEARKADDIVIXMKELLIFDHQQLKKTKQITEAQINKHKXDVIYEVNDXVXLFFRNMKTIRSCKDLKNKQLKLYQIIANIEIFYRLCLSESMKRLHSMFSSKLLRLYFDDSLSEQHSESSKSLTIENDKHXKIDDILNFRCYXDXI
Ga0272433_1000156032	F006206	N/A	LYNQIEVLLKENYFEKSFLINASLISQSNSFNLRSLIDSDFVIYMLIHDKLVNKVCQKFEIQSISLAKEKLIREYDEKLARKTIIYKILLNLTIKSHKKLTVLMLIADIEHYEAILSKLXMNKNEILLNIRHDTIVFSD
Ga0272433_1000156036	F037509	N/A	MILISLFIQVHSTDNKINIKKFVYLMINDIERQNNIKKSIKSMKIYNHVIARESIAQSVTSVQIN
Ga0272433_1000156041	F036504	N/A	VIFRLKDDADQQIYAKHHVDAFSFYHSLSKLLKHLKEIYEDQNLIQKCRCKYVILKQLNKFFSSFYLEFTRIFSFLNYDNITLMNDIQNKINNCLQNALSVCLIKFSSLDKLKIFLQDVNNKQQVNYQLRDEQXTVKLIATSKKRFVSLLTSALVLTTSYVQLITFFILEFEXSRMSIICFNCKVLNYLSKNCFQLKTSTLTSCAFTSRLNEIIMLKEEKKLFTEKLKNEAKN
Ga0272433_100015608	F028978	N/A	MSNRMKIADLKKKKNDESIYQLILKVNRINKDCVLLHEVVSKDEAQYKDIKLRNYQVQNEILYQDDLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272433_10001560

Overview

Ecosystem & Geography

Associated Families

Sequences