NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001640

Scaffold Ga0272433_10001640


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001640 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38699
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (10.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008735Metagenome328Y
F010214Metagenome306Y
F041516Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100016401F041516N/AMIQKAIQIYEAYNSSFKNHKIFHKKENLSNIEKTLHMLRENILVEDF
Ga0272433_1000164012F008735N/AMREITIIVHVHALYQTLLSCIQLIFVLLILKYVEKLLESRSNDDSDRICRRVNDERRLIVQDLCNDLSYHCKRLRIQFYINERTENDEXEXDDNIMLLNLILKLLHCAKDLNXIFDHTLSELFNSTLIVDQEIVRXLHLSERITRRDFNI
Ga0272433_1000164017F010214GAGMRVSVLFDYDASSLLCSSLTIFYTTMSRFNSRFDSRFEDERRFLCIRDARDCNVRRAVFSYSMIVIHXAEKYVMKERRTXXEDRVXLYXVILFFSXFDLCHVDVEXIVSIDVRSQSFDVXLXSMKENAFXSFSXALDFPRE
Ga0272433_1000164022F010214GAGMRVSVLFDYDASSLLCSSLMIFYTTMFRFDSXFEDERRFLCIRDARDCNVRKAVFSYSMIVIYXAEKYVMKERRTXXEDRVXLYXVILSFSXFDLCHVDVEXTVSIDVRSQSFDVXLXSMKENTFXLFSXALDFPRE
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