NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001871

Scaffold Ga0272433_10001871


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001871 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34861
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048018Metagenome148Y
F096306Metagenome104Y
F102180Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100018713F102180N/AMMKMNXELNKRLKESTLVIIHHDELKELIARMKHLADVVTVNQECHEKIYKIYSNNQTFLKTIKAMISTKNQTRLQXV
Ga0272433_1000187130F048018N/AMTLSXMSXMIXRRSLFELSTYFLSXKYRXFSCSLYSTRKILLXCCASLQSASIIXTANLSLISTCFHNVXMRMSAESLSRFKMSXSSXDLMFSTLNSSISRFIRARICKSAEITENKCNXTESRAMICDXSFMTLMSKTSKTRFLIILKFKTXVFRIVXC
Ga0272433_1000187135F096306N/AMFAMYDNHAVDSLIIDDDSNEERSCKNNSEIQASMILLDIAILIATNVKIVFVESNDK
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