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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031450 Open in IMG/M |
| Scaffold ID | Ga0272433_10001967 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33450 |
| Total Scaffold Genes | 42 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (33.33%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F036994 | Metagenome | 168 | Y |
| F037509 | Metagenome | 167 | Y |
| F044227 | Metagenome | 154 | Y |
| F048685 | Metagenome | 147 | Y |
| F070712 | Metagenome | 122 | Y |
| F096307 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272433_100019671 | F036994 | AGCAG | MXNRMIIKADSLVDLLIEEINYRLVIEADSLVAREREIDXFTDR |
| Ga0272433_1000196711 | F044227 | N/A | MXLQLRSSDNETDTHVLLELIASAIKNAMKRXLLELSNNHHYYEKSQSSCKNDDENEASETI |
| Ga0272433_1000196733 | F070712 | GAG | MSDIKEKKFLNKVRKQVIFAEKRDSLNLYRKIEITTFVDHSKSYDAILTSVKNINLQAEICFICHKSDHTSRKCSDQSRVNVLKDNEFNHLNSESDSDSKN |
| Ga0272433_1000196736 | F037509 | N/A | MILISLFIQVHSTDNKMNIKKFVYLMINDIERQNNIKRSIESTKTYDHMIARESIAQSVASVQID |
| Ga0272433_1000196737 | F096307 | N/A | MLYIVVTQIDASLKGDVLKHKEDVGLKDVCDTKECVCHRNLLITRNTKKYVCLEGNRSWLEGAREGKRCWAISVPNLGQI |
| Ga0272433_100019674 | F048685 | GAG | MRXVQKLADFNFKIMYQLSKQNIKINALIHXINVMLKDLDDERIYYQXIIILTLNXMKIADLKKNISESIYKQILEINKIDENCMLLREVIARDET |
| Ga0272433_100019679 | F000597 | N/A | VTFIKDVMKDVLISLMMSMSNDSFASESLTTECILSSNEINYSLKSLINIKAADYSFIDEVIVQIVYDQLQIKSLTLIKAKSIREFNDYYAKNLIIYIIYSNLTVQDHIIDITSMLITQL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |