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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031450 Open in IMG/M |
| Scaffold ID | Ga0272433_10002009 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33016 |
| Total Scaffold Genes | 33 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (27.27%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F005901 | Metagenome | 386 | Y |
| F010214 | Metagenome | 306 | Y |
| F040408 | Metagenome | 161 | Y |
| F075493 | Metagenome | 118 | Y |
| F075494 | Metagenome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272433_1000200913 | F010214 | GAG | MKVSVLFDYDTLVLLCSSLMIFYTTMFXFNSRFKDKRCFLYIHDIHDYNIHKAVFSYSIIVIYXAEKYVMKERCTXXEDRMXLYXVTLFFSXFDLCHVNIEXIVSIDMQSQSFNVXLXSMKENAFXSFSXALDFSCE |
| Ga0272433_100020092 | F040408 | N/A | MYDYKSIFDIHIKNDAMKEEMSAVKERVEMLQDVQNTLMQ |
| Ga0272433_1000200920 | F075493 | N/A | MXSVQAMHKYMLRHLITSFAVTLQAIHVXNVSKVQINVQIYAFNSDVHCKNAFCFLKIITHLYHLIAQMQSLCXNYVNVCDAFSVLFSSLISLIFVILHYCDAITCXNHCEEESVLFAFQLYLCIFLNENIQKYYFLDDE |
| Ga0272433_1000200928 | F000597 | N/A | MKNVLISSTTSMSDDSFASESLTIEYILSSNEISYSLKSLIDIKAADYSFIDEVIAQIVCDQLQIESLTLIKTKSIQEFDDHYAKKLITHVIYSNLTV |
| Ga0272433_1000200929 | F005901 | AGAAG | MNDKLIVNVDQFNDEIICIVYMMSRLEDDAAKYIFAXHHFDSLNSFTSIYELFNHLKEIYDELNKNQKSQREYNALRQADKSFNVFYFNFIKLFSYLNYDDCTLMNNLQNKINNRLQNALSICSKNFTSLFHLKKFLQDVNNKQRVNYQLRSERCIVIIKVTVISDKHATFLSMMTLIINYVKSTIFSIFKSARSSIICYICKTLNYLFKNCSKLNKINIFASXAFILCLHEIIILKNKENEKMSSFKNSETKK |
| Ga0272433_100020094 | F075494 | N/A | MINDVEKTFVHSVSKRKYSAKHVESRSQDEIYCTQVINEVKKMFVHSISENTSTCSAMHVRSMLLRVMFLTMRETHLDEVHFLKDKIFQFKSTTSRSTDVKTXIHRDCNVAEKQLNSVAKTIDCKQLISRAIVRVLTIHEMIYNFSSKFIIELIKIL |
| Ga0272433_100020099 | F010214 | GAG | MKVSVLFDYDASSLLCSSLMIFYTTMFRFNSRFKDERCFLCIRNAHDCNVRRAVFSYSMIVIHXAEKYVMKERCTRXEDRVXLYXVTLFFSXFDLCHVDVEXTVSIDMRSQSFDVXLXSMKENAFXSFS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |