NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272433_10002015

Scaffold Ga0272433_10002015


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10002015 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32954
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (25.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F009580Metagenome315Y
F048018Metagenome148Y
F074204Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000201510F009580N/AMIYIQIFECNLAQKLNFSCRQQDFFIYIDDIIIINVHDMQSEELLIXVFFSNFAXMLQLAVVAQLSLVADFLDLRNDQSLILNDDNNET
Ga0272433_1000201511F074204N/AMIVFCILHQAQSKVFTFALIDSEVLTYVFMNKFFAQKHHFFLHQLTHSCKLQEFNDQVTLINDITYVIKITMILDEHIKKLFFYVIELSQYLIIMNLS
Ga0272433_1000201517F048018N/AMTLSXVSXMIXRRNLSELSTYFLSXKYKXFSCSLHSIREILLXCYASLXSTSIIXAANLLLISTYFHNVXVKVLAESSSRFRVSXFSXDSMFSTSNSSNSKFMKVKICKDAEITENKCNXIEFKMIIYDXNFITLMSKMSKMRFSTILRFKT
Ga0272433_100020159F001951GAGMTITKLKFIDSSKDEKERNKNTVETTITKIMILKLKELLIDAKMFLTLMNKTITKMKQD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.