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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031450 Open in IMG/M |
| Scaffold ID | Ga0272433_10002115 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31720 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (13.16%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F006206 | Metagenome | 378 | Y |
| F008735 | Metagenome | 328 | Y |
| F074203 | Metagenome | 119 | Y |
| F086377 | Metagenome | 110 | Y |
| F089602 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272433_1000211511 | F001951 | N/A | MIMTKLKFIDSSMNEKERDENTVETTVTKMIILKLRELLVNTKMLLTLMSETEKKTMKXD |
| Ga0272433_1000211512 | F089602 | N/A | MKDEXSSFIKILSEEDNDLSDITDIAFHAINQQKVFHQEIFFLLIEEIVIVNKAICVLLQSFAKI |
| Ga0272433_1000211513 | F008735 | N/A | MKEITIIVYIHALYQTLLLCIQSIFVSFILRYVEKLLESKSDDDSDRICKRMNDEKRLIIQDLCDDLSYHRERLRIQLYIDXRTENDEXEXDNNIMLSNLILKLLHYAKDLNXIFNHTLSELFSNMLIIDXKIVRXLHLSERITRXDFNVXKCCRKCRSFIMSKTKLN |
| Ga0272433_1000211515 | F006206 | N/A | LYKLNEILLKENYFEKSFLIDMHLISQNQSFNLCSLINSDSVIYMIVHFNLVNKVCKKLKIQSISLTKEKLIKDYDEKIFKKIITHKILFNLIIKSHKKLTVSMLIIDINHHEVILSKL |
| Ga0272433_100021153 | F074203 | N/A | MFNHSFIKKCSEEFQNYFSQIFDADSLKSLSVASFIHEDDKLFAEIIILFMFYEIXKTXSLALDEETDQLYELNKQQEDKIKELKIKLQAKENTSSAFIYSERSRSQKISDSSLFTDEKNFIXENXYEKIQNKLKININLFFNEXVKLSYIHFRLFNDTAEIIQTRCKHDYINLYKIVDDLLKKLAQLFNDLNKRVNFCRKYYNLIQEFKKFNEFYT |
| Ga0272433_100021158 | F086377 | N/A | MIQRFXDQRQRISIFDDDDVQILIVHAEAKFFFKFLNEENRDDHLRVIDLNELFAQILI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |