NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10002159

Scaffold Ga0272433_10002159


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10002159 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31142
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (14.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F004755Metagenome424Y
F020121Metagenome225Y
F071806Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000215916F001951N/AMIMIKLRFIDSSRNEKERNKDTVKTTVTEMIIFELKELLINAKMLLILMNEMMMKMK
Ga0272433_1000215921F071806N/AMFDIKVIKLQSQIIILDSVQLHLFSIISALSQILAFMNLKIKEFDVENIKSQLDQDILNLDEDFADILTQTL
Ga0272433_1000215924F020121N/AMKKLIEHLRDEMLIAQIIYEFNVNLSCCSCFKYFIKDEVXLNACNLSIIRLAVKLNDHNVDFFKIKRVFKNNSLIIKLNFSTFMKIHLIFYVILLNHITSDFLLSQHQKSREFVIVKNDERFXYVNSILNFKRDRCYSSSLLKYYVDXEDHFFT
Ga0272433_100021594F004755GAGLFNDSNKEVNFYKEYYNLIQEFKKFNEFYTQFQRLSFYLNYYEKQLIVDLKDKIYSRLXFIXINQLVQSDFLKEIRFYLIHLNNDQRVIQKIKNKIKHVNDLSKTIFHKVIIVTQSVDHSKSDQLKSRDAILTNVKEANILVESCFIYHKSDHSFK
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