NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10002205

Scaffold Ga0272433_10002205


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10002205 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30665
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (8.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004755Metagenome424Y
F024448Metagenome205Y
F039410Metagenome163Y
F061400Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100022051F039410N/AXFFFDXFSRVLNEAASMLRIENDSFLVVVETGRLSIIEASVXMIEESEVDRDQLECFELREIEKTEIEVFSXFEKTMTSFCIFNNISFLFIQSLLNMTSXXLISAISIDTVNFLXLSMMRLNEILXVMIFLDIFPS
Ga0272433_1000220516F061400N/AMTSESVKQIMLLKYYNCIMNLNSEKTIIKAXDIYHREKDEDNVINESDDSFKTDLQNVLCSINV
Ga0272433_100022052F004755N/ALKELAELFNDSNKKVNFHREYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIVDLKDKINSRLRFVXIDQLVQLDFLKEIHFYLIHLNNDQRVIXEIKNKVNLIKCIDDLSKIIFHKAVVTQSVDHSKSDHLKSRDAVLTSVKKADVLVETCFICHKSGQSFRECLDRLTRINAVNNEYDRFDFDLNSDSKN
Ga0272433_100022054F024448N/AMKDMLISSMMSMSNDSFASESLTTKYVLSSNEISYLLKSLIDIEAADYLFIDEVITQIVCDQLQIKSLTLIKVKSIXEFNNHYAKKLIIHVIYLNLTVQDHTIDTAFMLITRLNQHQMILEKTXMNKINLVIDMQINSLXFSNFNSTSQKSIVLFSSHKIITKQKSLTSTHILRRSFTFVTLQLSQKSLSFN
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