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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031450 Open in IMG/M |
| Scaffold ID | Ga0272433_10002335 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29238 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (31.43%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001951 | Metagenome | 612 | Y |
| F005901 | Metagenome | 386 | Y |
| F009377 | Metagenome | 318 | Y |
| F023763 | Metagenome | 208 | Y |
| F028367 | Metagenome | 191 | Y |
| F036504 | Metagenome | 169 | Y |
| F057012 | Metagenome | 136 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272433_1000233512 | F023763 | N/A | MNFQNCLMLILMSRIECISLFKEIFXATCQSIQLIINLVKIINNVIVEFRQKLTSTSLMTTQLLNXHEILKIFVIHDHLDRINRVFKLQSSFLESANNDHEFFIVDLVVTLDXIMLLRKVSDXMKNLVLIRLRKNVFEHIVQSINFYHNLVIXIIVIKNNFKSEDFLKNVECNLTFLKSDKEYIFSDETSKRSSYSTIVIDESFIKVREI |
| Ga0272433_1000233516 | F036504 | N/A | LLKHLNEIYYDQNRNRKCHREYNALKQSNKSFSFFYFEFTKIFSFLDYDDXTLMNDLQNKINNHLQNALSVCLIEFSSLDXLKTFLQRVNNKQXVNYQLRDEQXTVKSIAASKERFVSSLTSASVLITSYVQLATFFTLESEXSRMSIICFNCKVSSHISKNCSQLKTSTSCAFIFCLNEIIMLKEEKKLFTEKLKNETKN |
| Ga0272433_1000233522 | F028367 | GAG | LCKLDEILLRENYFEKSFLINAHLISQNXSFSLCSLIDSDSIVYTIIHSNLVDKVCKKLKIQSISLTKEKLIRNYDEKIFKKIITHKILFNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMQNNVIVFSNQLNTSISIFSIFLNSKHSS |
| Ga0272433_1000233526 | F005901 | N/A | LHSYISIYKLLEHLEEIYKNQNKNXKYHHEYNILKQADKFFNIFYFNFMKLFSYLNYNDCILMNDLQNKINNCLQNALLICSKNFTSLTRLRIFLQDVNNKQXVNYQLRSERCTVIIKVTVVSDKCAATSLSVTTSVINYVKSIISFISESVRSFIICYTCKISSHLSKNCSQNKINTSAFCAFTFRLHEIIISKNKENEKMSFENSKAKN |
| Ga0272433_1000233527 | F000597 | N/A | MSDDSFASESLTIECVLSSNKISYSLKSLIDIEAADYSFINEVITQIVYDQLQIQLLTLIKAKSIQEFNNHYVKKLIIHVIYSNLTV |
| Ga0272433_1000233528 | F009377 | N/A | MIRSTESESVSIAHYKLQNARRESLLSQNRTASKEEDMNASLNTEEENMNALLFNHEMIKISINEELNAXIIDKRTDDIIIFIKYMTHQHDIKIETYNDMIQMLKDVNKINIKLKTIQTTLNIIRTRLQKKMKDKNVIIHHLKSALSQQSTLILKDXFLKLIKLSDSSLFEDLKQNVNNXLSXMQNKLKMNKNHFSIEELKIAYVKSXVDETMIKHIAS |
| Ga0272433_1000233530 | F057012 | AGAAG | MXLSXISSDTRNCNEFEKQSVLVKVMIENDMLIFCFISMLDDSFNFKSFIVNIILNSLEKIFRFLVLINIKVTDMTFINDSLISELCERFDIQSISLFKLKLIYSYDEILDRRSITYALYISITIQEHKNEMMFLLITHLDQHKIIIDNLXLKRNQILINSANNQLISLSNIQILKLIVLKASSQSAFHXLESSEICEMKRKNLKSMSMIILKRTTNSKSVNRFIELVLIQKQST |
| Ga0272433_100023359 | F001951 | N/A | MKLRFINLLRDKRERDKDIVETTVTEVMIFELKKLLVDAERLLTLMNKTMMKMKQD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |