NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10002407

Scaffold Ga0272433_10002407


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10002407 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28513
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F011463Metagenome290Y
F035571Metagenome171Y
F075493Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100024071F011463N/ARLEARKADDIVIRMKELLSFDRQQLKKTKLIIEVQINKHRRNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLSLYQITAKVSIFYHLRLSVSMKHLHSMFSSKLLQSYSKDLLSEQHSESLRSITIKDDEHXKIDDILNFRRYRDRIQYKVKXTDLDRNDEXYYVDKEKFNDSEKVLNEFHKLYSNKSR
Ga0272433_1000240714F000597N/AMKNVLISSTTSMLNDSFASESLTIECILSSNEISYSLKSLIDIKAADYSFIDEVIAQIVYDQLQIESLTLIKAKSIREFNDHYAKKLITHVIYLNLTV
Ga0272433_1000240715F005901N/ALHSYILIYKLLKHLEEIYENQNKNRKCHCKYNALRQADKLFNIFYFNFMKLFSYLEYDDCTLMNNLQNKINNHLQNALLICLKDFIILHRLKSFLQNVNNKQRVNYQLXSERCMIIVKVIIASEKRVTSLLAVMTSIIEYVKLTIFFTSESVRSSIVCYTCKTSDYLFKNCSQNKINTSTSHVFISCLHEIIISKNKKNKKMTFFFKNSEAKN
Ga0272433_100024078F035571N/AMYVSVSRVSMFTLLNASATXRRVXFXSVSSLHSLLDSSSFLSRXCQTDASNAISDLTTAEYTCLAFVKIASYVKTLRQLSVSILVTXFVSICRRCASHRSFVFSCISRIRTSDFDLITELFICMLVVMSNLFDFLVKCVSLYFSDANVASXVQAHFVQTSCALLSVLQISSVNLS
Ga0272433_100024079F075493N/AMQSVXAVHEYMLRRLMTSFAVASRTIHAXNVSRVQISVQIYAFNSDVHCKSAFCFLKIITHLYHLIAQMQSLCXNCVDVCDAFSVLFSSLISLIFVILHYCNAIACXNRCEEESVSSASQLYLRIFLNEDIQKYYFLDDKXARNDAINFRQTSAY
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