NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10002937

Scaffold Ga0272433_10002937


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10002937 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24680
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (41.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055319Metagenome138Y
F069514Metagenome123Y
F074204Metagenome119Y
F094626Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000293721F074204N/ALKLFEFNSTFKDNYMIIFCILRQVQSRVLALALIDSEVFTYVFMNKFFAQQHHLFLHQLIYSCRLQEFDDQVTLIDDITHVVEITMILDKYIKRLFFYIIELSQYFIIMSLS
Ga0272433_1000293722F055319N/AMIEVRVRRLRLVNKMIYIQISERDLAQKLNFFRRQQDFFIYTDDITVINVYDMQSEELLI
Ga0272433_1000293723F094626N/AMFLNERNIITAKSFKKLDDKMLNSFINLDLVDSSYKLKLSESMHVYDVFYSDLLRSVIDNLLSDQKNELSDSIMINDENE
Ga0272433_1000293724F069514N/AMIEFIDNNALFSVIFLIFFFLNKDFHSRMSFEFNVIEYESSCERLQMTKVENISEHMNKTLKFARKSLVKT
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