NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0272433_10003195

Scaffold Ga0272433_10003195


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10003195 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23188
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (13.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008169Metagenome337Y
F039410Metagenome163Y
F048017Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100031953F048017N/AMKNKQLSQQQVNYLNILSKFNFQIIFRSDKMNTKVDALTXMSLADVSESAQXLEDCFQTILIFNRIDVLLIELKANLYQQVCMINQMNEFCNEYKQAMNENKLKFHITKLKNCEIIDSILFRKDLLXISENMHTKLLQEVHDQFSISHFDNKRTINLIQQFYY
Ga0272433_100031955F039410N/AMFKAFKLHXVLYAISLSISVMNRAKTSVXFFFEXFNNVLNEAAFMLQIENDSFXAVIETSYLSIIEILVXVIEEDEVDRDQLKCFELRRIEKIEIEVFNXFEKTMTSFRIFNNISILFIQSLLNMTSXXLISAININTVNFLXLSMMRLSRILXVMIFLNIFSS
Ga0272433_100031956F008169N/AMSKRSFIKECFKEFQSRFSQISETDSLKLSSAESFINEDDKSFTETVILSVSIENXKTRCMILNRETDQLNELSKQRDNKIKELKIRLQTKEITSSDFIYSEHSKFQKISDSFXFTDEKNSTXKNXYDKIQNKLEININLFSNERVKLSYVHFRLFDDAADVAQFRRERDCVNFYKIVNDLLKELAELFNDSDKKVNFRRKYYNLIQESKKFSKFYTQFQXLSFYLKYHEKQLIIDLKDKINSRLRFIXIDQLVQSDSLKEIHFYLIHLNNDQRVIXEIKNKVNLIKHINDLSKIIFHKVVVTESVNHSKSDHLKSRDAILTSVKEADVLVETCFICHKSDHNFRECSDRLIRINAVNNEYDCFEFNFNSNFNSKN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.