NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10003349

Scaffold Ga0272433_10003349


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10003349 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22471
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (22.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004755Metagenome424Y
F011463Metagenome290Y
F074204Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000334915F074204N/AMIVFYILHQAQFKVFTLALINSEVFAYVFMNKFFTQQHHLLLHQLIHFCRLQEFDDQVALIDDIIHVIKITMILNEHIERLFFYVIELNQYFIIMNLS
Ga0272433_100033493F011463N/ALKKTKLIIKAQINKHKXDIIYKVENXVXLFFRNVKIMRSCKDLKDKQLESYQITVKAKIFYHFRLSVSMKHLHSMFNLKLLQSYSEDSLSEQHAEFLRLIIIDEDDDEHXEINDILNFRCYRDRIQYKIKXKDLDRNDEXYYVDKDEFDNFKKVLNEFHVLYLRKSC
Ga0272433_100033497F004755N/ALKELAELFNDSDKKVNFRRKYYNLIQESKKFSEFYTQFQRLSFYLKYHEKQLIIDLKDKINSHLXFIXIDQLVQSDSLKEIHFYLIHLNNDQRVIQEIKNKVNLIKCVNDLSKIIFHKAVVTQSVNHSKSDHLKLHDAILTSVKEADVLVETCFICHKSDHSFRECSDXSTRINAVNNEYDRFKFNFDSNFNSKN
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