NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10004649

Scaffold Ga0272433_10004649


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10004649 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18095
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F011463Metagenome290Y
F055317Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100046494F005901N/ALIVSFKHNSDIIFVQRCFDFSNSFTLIYKLFDHLKEIYDELNKNRKSQREYNALRQVDKSFNVFYFNFMKLFNYLDYDDCTLMNDLQNKINNRLQNALSVCLKNFTLLICLRIFLQNVNNKQRVNYQLRSKCCTVIIKVTVVSDKCIITSLSVMTLIINYVKSIISSTSESARSFIICYTCKVSSHLSKNSF
Ga0272433_100046495F011463N/AMKELLNFDRQQLKKTKLIIEAQINKHKRDIIYEINDQIXLSFRNIKITRSCKNLKDKQLDFYSIIVKVETFYHLHLFTSMKHIHLMFSSKILQSYSNNSLFDQHIKSLRSITIKDEEYXKINDILNFRRYQDQMQYKVKXKDLDKDDDXYYVDKEEFNDFKKVLNEFHTLHSNKSR
Ga0272433_100046498F055317N/AMKQXDKSEIQQLKAKLQAFTAITINVIIIVFSIVIYFERFRYYKILDSSMFTDEKNSTXKNXSLDIQKKLAMNINIFSNKFYKLNYINFQLADDVVEFTQVRCNFNCDNFYLTVNELLKKLAQSFHDSDKKDNYRRKYINLIQESKKFNDFFNQFQRLYIYLKYQKNVLVVDLKNKINSRLRIFXTAQMKSLIKLSDIQNYLIHLNNEHKAVRKIKNKLLKHDDSKIIISKAIIAVQSSALKSDXSKSRNAVLINVKNADILVEICFVCHKSDHSFRECLNQSIKVNAVDENYDCFELNTESKFKLKN
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