NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10004889

Scaffold Ga0272433_10004889


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10004889 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17389
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010214Metagenome306Y
F028368Metagenome191Y
F094622Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100048891F028368GAGLCKLDEILSEENYFEKSFLIDVFLNSQNRSFSLRSLIDSDSVAHMLIHANLVNRVCEKLEIQSISLTKEKLIRDYDEKISKKIITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMQNDVIVFPNQLNTSISIFSIFLNSKHSSXSRSTSLSFIIQTKISIMLKRSVSTTTKKESFSIRSIDAASFKTLLN
Ga0272433_1000488910F094622N/AMFILKQRVYLNDSDSKDDVTAIMMKMNXKLNKRLRKLTLVITDHDELKKLVVKMKHLANVVTANQECHEKIYKVYNDNQTSLKTVKVMISTKN
Ga0272433_100048893F010214N/AVSVLFIYDASSLLCSSLTIFYTTMFRFDSXFKDERHFLCICDAHDCNIHKAAFSCSMIVIHCAEKYVMKERCTRXEDRVXLYXVILFFFXFDLCHVDVEXIVSINMQSQSFNVXLXSMKENVFXSFSXALNFSRR
Ga0272433_100048896F010214GAGMKVFVLFNYDASSLLCSSLMIFYTTMSRFDLQFEDERRFLCTRDACDCNVRRAVFSYSMIVIHXAEKYVMKERCTXXKDKVXLYXVTLFFSXFDLCHVDVEXTVSINVQSQSFDVXLXSMKENAFXLFSXALDFSRE
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