NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10005255

Scaffold Ga0272433_10005255


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10005255 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16575
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F036504Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100052552F036504N/AMNHYSTEKIHIVYVIFRLKDDADQQIYAKHHVDAFSFYQSLSKLLKHLKEIYEDQNLIXKCHHEYVALKQLNKLFSSFYSEFTRIFSFLNYDNVILMNDIQNKINNHLQNALSVYLIEFSSLNKLKIFLQDVNNKQQVNYQLRDEQXTVKSIAASKKRFVSLLISASVLITSYVQLATFFTLESKXSRMSIICFNCKVLNHLSKNCSQLKTSTSTSHAFISCLNEIIMSKEEKKLFTEKLKNEAKN
Ga0272433_100052553F000597GAGGVTFIKDMMKDVLISSTISSSNNFFALKSLTTKCVLSSNEISYSLKSLIDIEAADYSFIDEIIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYLNLIIQDHMIETTFILIIXL
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