NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10012342

Scaffold Ga0272433_10012342


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10012342 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9003
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023762Metagenome208Y
F041515Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100123428F041515AGGAGMGMNQMIVLQAGRDAHDAQDAQDAPQEPAPCPFNAAPMTLFEVIDRAVSAVVDQIHRWDDLDEREGENEAHFEAYVRWRVAIVDDAAAQARTLMITDGLTAEGNPWLAAHARA
Ga0272433_100123429F023762GGAGMVAQAQDTSTPLSPVSDGRGRALTPQERGRLGGQATLARHGTEFYSRIGRVGFRAAVDAGYGAYLLGKLAPSYRAKFGRDPVLGRSKAGDKARADARQATPTLGRCAWPGCTTQATERHHVDGWKVSPETCGLCTPHHAALEKAYRTARTVYRPHSTDPVTKRAVALSIGIGLDDSVPF
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