NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10020052

Scaffold Ga0272433_10020052


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10020052 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6266
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005901Metagenome386Y
F024448Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_100200521F024448N/AMKDVLISSTTSMLNDSFVSESLTIECILSSNEISYSLKSLIDIEAVDYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIDTASMLITRLNQHQMILEKTXMNKIDLVIDMRINFLRFSNFNSTSQKSIVLLSSNKSITKRKSLTSTHILKRSFTFVTSQFSQNKKFIEQLKQRDAALTNINFKSMFSLKSVYFSLKS
Ga0272433_100200522F005901AGAAGMNDKLIVNVDQFDNETICIVYMLSRLEDDVAEHIYAXRCHDSSHSYYLIYELFEHLKEIYNEVNKNXKCRHEYNALRQADKFFNVFYFNFIKLFSYLKYDDCTLMNNLQNKINKCLQNALSVCLKDFTSLHXLKIFLQDVNSKQRVNYQLRSKRCTVIVKVTVVSDKRATTLLSAETTSIIDYVKSIIFSTFKSARFSIICYICKISSHLFKNCSQNKINTFASHAFTLRLHEIVISKDKENEKMSSFKNSEAKN
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